PTM Viewer PTM Viewer

AT3G61690.1

Arabidopsis thaliana [ath]

nucleotidyltransferase

36 PTM sites : 3 PTM types

PLAZA: AT3G61690
Gene Family: HOM05D000751
Other Names: NULL

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
ph S 13 GEHESWAASPPSPSGLHPNGLLPGK109
114
ph S 407 LGDPEPYHQAENVSNSLNNKR114
ph S 429 SMPSQQNNCGTEITSR88
114
ph S 452 SRGNSYQPAQEVNSNQSALNDK100
114
ph S 456 SRGNSYQPAQEVNSNQSALNDK83
109
114
ph S 498 TRSSPELTETHGEALLQSR18a
44
46
48
59
83
85
88
109
111a
111b
111c
111d
114
SSPELTETHGEALLQSR88
106
111a
111b
111c
111d
ph S 499 SSPELTETHGEALLQSR83
111a
111b
111c
111d
ph T 503 TRSSPELTETHGEALLQSR83
ph S 513 TRSSPELTETHGEALLQSR88
ph S 529 QTNSTRVDSIR114
ph S 539 KKSLESETLSSGVR88
SLESETLSSGVR88
114
ph S 542 SLESETLSSGVR114
ph T 544 SLESETLSSGVR114
ph S 546 SLESETLSSGVR114
ph S 557 YSADSSSVR114
ph S 713 TGSDDMGSSEVNVDESDNDLWHEPER100
ph S 747 HQSSFAEHSFVPSR114
ph S 771 GDDLENSHSPVR88
114
ph S 773 GDDLENSHSPVRGSSQIQSEER100
LTRGDDLENSHSPVR83
100
GDDLENSHSPVR85
88
109
111a
111b
111c
111d
114
ph S 779 GSSQIQSEER114
ph S 792 SVSGASSVR88
ph S 805 TSSESSWDGSTTR114
ph S 807 TSSESSWDGSTTR114
ph S 808 TSSESSWDGSTTR114
ph S 817 TSSESSWDGSTTRGSKPAKDR44
ph S 830 KVVSGAASTLYGK114
ph S 834 KVVSGAASTLYGK114
ph S 847 SVPEHSIQIDDDNR114
og S 861 EWIPVSSNEIIDR81
ph S 989 GLDQSEIVVSSHSTR88
ph S 1138 TDHHSDREGNWNAGSK100
fuc S 1188 HESSSYSAHHSQNGPIR162
ph S 1289 GAAASAHMSSPDDPSSPHFPR88
114
ph S 1290 GAAASAHMSSPDDPSSPHFPR83
88
114
ph S 1295 GAAASAHMSSPDDPSSPHFPR83
100
114
ph S 1296 GAAASAHMSSPDDPSSPHFPR88
100
109
114

Sequence

Length: 1303

MGEHESWAASPPSPSGLHPNGLLPGKAASVTRPLDAERWAKAEDRTAKLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFMFGSVPLKTYLPDGDIDLTAFSANQNLKDSWANLVRDMLEKEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQIGGLCTLCFLEEVDHYINQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFYLFNNSFSGPLEVLYRFLEFFSKFDWQNFCLSLWGPVPVSSLPDVTAEPPRRDVGELRVSEAFYRACSRVYAVNIAPQEIQGQPFVSKHFNVIDPLRENNNLGRSVSKGNFFRIRSAFTLGAKKLTRLLECPKENLIHEVNQFFMNTWERHGSGRRPDAPGNDLWLSRLGDPEPYHQAENVSNSLNNKRNQNAIRLGGVHGARSMPSQQNNCGTEITSRVTYQTQKSRGNSYQPAQEVNSNQSALNDKLQQTVKPETLVNNFHGRHIFARTRSSPELTETHGEALLQSRRSRAAPDAGKRQTNSTRVDSIRKKSLESETLSSGVRYSADSSSVRHTPSPQSPDSTADMSSAVNSYYDEVGSVSVNEDFSVAGEQEEQDLVNSMTSVTGQGFNGHFPFPFNFSTGHLPFPITPSILASMGYGQRNMPGIVPSNLPFIEAPWSTNLQFPQNFVSSPFTHYFPSGAHPISEKPSKTGSDDMGSSEVNVDESDNDLWHEPERGTHSFGLENGGYGMHQADDKHQSSFAEHSFVPSRRKNRLTRGDDLENSHSPVRGSSQIQSEERTVGSRSVSGASSVRSRTSSESSWDGSTTRGSKPAKDRRNRKVVSGAASTLYGKGKSVPEHSIQIDDDNREWIPVSSNEIIDRDLGPRPTVPSFQVQRHQIHGHELAQASGSESTVSLAPFILGHGMQQNEVDNSGYTFYPTGPPVPIVAMLPMYNYQAGGNATSDALASHHSVDEGVENHEPCKSFDSSRGLDQSEIVVSSHSTRMGSSAEQVERKNDILNGDFISHWQNLQYGRSCQNSQHPPVLYPAPVVVPPAYLQGRLPWDGPGRPLAYTNAVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYANETPRYRSGTGTYFPNPKISPREQRPTSGMRRGNYGHDRTDHHSDREGNWNAGSKTRGSGRNHNNRNQADNKPISRQDRSDRHWGSSYRHESSSYSAHHSQNGPIRSNTSQDASGNIAYGMYRLPPGMKQNSVTSSEGHNVPSVMMFYPYGHNNVYNSPSEHNEYGSLGPGGEAPHLNDEDQPRFRGAAASAHMSSPDDPSSPHFPRGK

ID PTM Type Color
ph Phosphorylation X
og O-GlcNAcylation X
fuc O-Fucosylation X
Multiple types X
No domains or active sites found for this protein.

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
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